Program

A bstracts

Single Cell Genomics | SCG 2015 Program

Wednesday, September 16
Time	Session/Lecture info
12:00-14:00	Welcome
12:00-13:00	Registration & coffee
13:00-13:15	Mayor of Utrecht Welcome address
13:15-14:00	Aviv Regev, MIT/Broad Keynote Lecture: Towards a human cell atlas
14:00-21:00	Single-cell epigenomics Chair: Alexander van Oudenaarden
14:00-14:30	Bas van Steensel , Netherlands Cancer Institute Mapping of genome - nuclear lamina interactions in single cells
14:30-14:50	Stephen Clark , Babraham Institute scM&T-seq: A method for parallel bisulfite and RNA-sequencing in single cells
14:50-15:20	Amos Tanay, Weizmann Institute Single cell Hi-C
15:20-15:50	Coffee Break
15:50-16:20	Wolf Reik, Babraham Institute DNA methylation dynamics in single cells
16:20-16:40	Rahul Satija , NYU Simultaneous transcriptomic and lineage analysis within a single cell
16:40-17:10	Wouter de Laat, Hubrecht Institute Single molecule regulatory DNA contacts in living cells
17:10-17:40	Coffee Break
17:40-18:25	Xiaowei Zhuang, Harvard Keynote Lecture: In situ imaging of the genome and transcriptome in single cells
18:25-21:00	Poster session & Dinner Buffet

Thursday, September 17
Time	Session/Lecture info
09:00-14:00	Imaging & spatial transcriptomics Chair: Amos Tanay
09:00-09:45	Jim Eberwine, UPenn Keynote Lecture: Spatially-Defined Cellular and Subcellular Genomics: The Role of Variability
09:45-10:15	Robert Singer , Albert Einstein College of Medicine Imaging mRNA Translation in Living Cells
10:15-10:45	Arjun Raj, UPenn Single cell analysis of drug resistance in cancer
10:45-11:15	Coffee Break
11:15-11:45	John Marioni , EBl Applications of single-cell genomics to early mammalian development
11:45-12:05	Jeffery Moffitt , Harvard Spatial organization shapes the turnover of a bacterial transcriptome
12:05-12:25	Long Cai , Caltech Single cell in situ RNA profiling by seqFISH
12:25-14:00	Lunch
14:00-23:00	Single-cell immunology & Oncology Chair: Sten Linnarsson
14:00-14:30	Ido Amit, Weizmann Institute Shaping the blood: lessons from chromatin and single cell RNA dynamics
14:30-15:00	Ton Schumacher , Netherlands Cancer Institute T cell recognition of human cancer
15:00-15:20	Diana Spierings , UMC Groningen Single-cell genomics allows detection of rare cells in primary lung cancer with genomic alterations present in most metastatic tumor cells
15:20-15:50	Coffee Break
15:50-16:20	Dana Pe'er , Columbia Characterizing cellular phenotypes
16:20-16:40	Peter Kharchenko , Harvard Linking transcriptional and genetic intratumoral heterogeneity
16:40-17:10	Marc Unger , Fluidigm Single-Cell Biology
17:10-19:30	Poster Session
19:30-23:00	Invited speakers dinner / Free evening

Friday, September 18
Time	Session/Lecture info
09:00-11:50	Single-genomics Chair: Rickard Sandberg
09:00-09:30	Sunney Xie , Harvard Life at the Single Molecule Level: From Single Molecule Enzymology to Single Cell Genomics
09:30-10:00	Christopher Walsh, Harvard Somatic mutation and genomic diversity in human cerebral cortex
10:00-10:30	Peter Lansdorp, ERIBA Sequencing DNA from single cells without upfront amplification
10:30-11:00	Coffee Break
11:00-11:20	Ashley Sanders , BC Cancer Agency Visualizing structural variation in single cells to explore genomic heterogeneity in human populations
11:20-11:50	Mike Stratton, Sanger Institute Signatures of mutational processes in human cancer
11:50-23:55	Single-cell transcriptomics Chair: Ido Amit
11:50-12:10	Liran Valadarsky , Weizmann Institute Counting your favorite transcripts in single cells
12:10-12:30	Martin Enge, Stanford Whole-organ lineage tracing of the human pancreas
12:30-14:00	Lunch
14:00-14:30	Sten Linnarsson, Karolinska Institute Molecular anatomy of the brain by single-cell RNA sequencing
14:30-14:50	Bosiljka Tasic , Allen Institute for Brain Science Adult mouse cortical cell taxonomy by single cell transcriptomics
14:50-15:20	Itai Yanai, Technion From single cells to organ(ism)
15:20-15:50	Coffee Break
15:50-16:20	Rickard Sandberg, Karolinska Institute Single-cell analyses of allelic gene expression regulation
16:20-16:40	Gioele La Manno , Karolinska Institute Conserved principles of brain development revealed by comparative single-cell RNA-seq in mouse and human ventral midbrain
16:40-17:10	Alexander van Oudenaarden, Hubrecht Institute Revealing novel cell-cell interactions using single-cell transcriptomics
17:10-17:55	Marc Kirschner, Harvard Keynote Lecture: Single cell transcriptomics and single cell physiology: the challenges ahead
17:55-18:00	Closing remarks
19:00-23:55	Dinner and party 19:00-01:00. Location: Nicolaikerk, Utrecht

Single Cell Genomics

sometimes the sum of the parts is greater than the whole

Program

Abstracts

Single Cell Genomics | SCG 2015 Program

Wednesday, September 16

A bstracts